Nucleic acid or amino acid sequences, from import and assembly over multiple alignment to annotation, SNP analysis, primer design and comparison of complete chromosomes.
This tutorial illustrates how easy it is to import sequences in GenBank or EMBL format into your BIONUMERICS database.
This tutorial illustrates how to import sequences in FASTA format from a text file.
This tutorial illustrates how to import sequence assemblies in BAM and SAM format in a BIONUMERICS database and to inspect the imported assemblies.
This tutorial illustrates how to import and assemble sequence trace files (i.e. from Sanger sequencing) in batch in a BIONUMERICS database.
In this tutorial we will screen a set of whole genome sequences of some Staphylococcus aureus samples for the presence of the mecA sequence. The assembled sequences present in the whole genome demonstration database of Staphylococcus aureus are used in this tutorial.
The BioNumerics SARS-CoV-2 plugin facilitates the processing and analysis of SARS-CoV-2 genomic sequences, whether downloaded from a public data repository or generated locally. In this plugin manual, all features of the SARS-CoV-2 plugin are covered, starting from the installation of the plugin, the import of genomic sequences, and all available analysis tools such as subsequence extraction and SNP analysis.
This dataset contains:
This tutorial explains how to use the BioNumerics emm typing script, developed for BioNumerics users that want to type Streptococcus pyogenes based on the portion of the emm gene that dictates the M serotype. The script assigns the emm type and subtype to imported (and assembled) sequences, by querying the CDC M-type specific database (ftp://ftp.cdc.gov/pub/infectious_diseases/biotech/tsemm/).
This tutorial illustrates how to import sequence assemblies in BAM and SAM format in a BioNumerics database and to inspect the imported assemblies.