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Creating a Minimum Spanning Tree based on MLVA data

This tutorial illustrates how to create a Minimum Spanning Tree (MST) based on MLVA repeat numbers. The same steps are also applicable for clustering of other categorical character data sets such as MLST.

PDF file: 
PDF icon MST_MLVA_data_0.pdf
Download sample data: 
MLVA repeat numbers
Text file, containing MLVA repeat numbers for 4 loci for 500 strains, including isolation information.