A sequence read set is designed to hold large sets of short reads generated by next generation sequencing (NGS). Base sequences and their associated quality scores are stored for single-end and paired-end reads, originating from various high-throughput sequencing platforms such as Illumina, Ion Torrent, PacBio, Oxford Nanopore, etc.
Sequence read sets
Import links to data stored at the BaseSpace storage repository
Import links to data stored at the Amazon S3 storage repository
Performing a de novo assembly on the cloud calculation engine
This tutorial illustrates how to perform a de novo assembly on the cloud calculation engine.
Performing a de novo assembly locally on your own computer
This tutorial illustrates how to perform a de novo assembly locally on our own computer.
Importing links to data stored at SRA, ENA, Amazon S3, BaseSpace and Alibaba
In this tutorial the steps to import links to following online repositories are described:
Importing FASTQ files and FASTQ file links
Essentially, there are two ways to import FASTQ files in your BIONUMERICS database: the default import method stores the sequence reads in the BIONUMERICS database and the second import method only imports the links to the location of the FASTQ files. In this tutorial both options are described.
Which steps are executed when performing a de novo assembly on the calculation engine?
Which steps are executed when performing a de novo assembly on the calculation engine?
Which trimming pipeline is implemented on the calculation engine?
Which trimming pipeline is implemented on the calculation engine when a read-based job is submitted?