In this tutorial you will learn how to perform some cluster analyses (UPGMA tree, minimum spanning tree) on MLVA data. You will also learn how to alter the layout of the clusterings and how to export the pictures to use it in a publication, presentation, etc.
MLVA analysis
Multi-Locus VNTR (Variable Number of Tandem Repeats) Analysis using the BIONUMERICS MLVA plugin. See the MLVA application page for a complete overview.Download PDF file:
Download sample data:
MLVA repeat numbers
Text file, containing MLVA repeat numbers for 4 loci for 500 strains, including isolation information.