In this tutorial similarity/distance based trees and phylogenetic trees (maximum likelihood and maximum parsimony trees) are calculated for a set of aligned sequences. Different groups are defined in the Comparison window giving a nice overview of the relationships, the clusters present in the database and the outliers.
Sequences
Nucleic acid or amino acid sequences, from import and assembly over multiple alignment to annotation, SNP analysis, primer design and comparison of complete chromosomes.
Download PDF file:
Download sample data:
FASTA 16S sequences
This FASTA file contains DNA sequences of the 16S rRNA gene for a set of 14 strains.